mkref

Table of contents

1. Introduction
2. Input and Output
   1. Input
   2. Output
3. Usage Example
4. Parameters

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Introduction

The mkref command in VAMPIRE is used to generate a motif database (in FASTA format) from a motif file produced by the anno command. This enables downstream analyses that require a curated set of motifs.

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Input and Output

Input

Input	Format	Description	Default
Motif	TSV	Motif file generated by anno	None

Output

Output	Format	Description	Default
Motif Database	FASTA	Curated motif database in FASTA	None

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Usage Example

Generate a motif database from an annotation file:

vampire mkref annotation_prefix motif.fasta

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Parameters